If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ), 'gf_id' => 'HOM05D000562', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000562' ), 'data_identifier' => 'HOM05D000562', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000562', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '981', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00690' => 'bna', 'A01p00710' => 'bna', 'A01p09720' => 'bna', 'A02p21930' => 'bna', 'A02p30740' => 'bna', 'A02p43640' => 'bna', 'A03p24850' => 'bna', 'A03p50600' => 'bna', 'A04p33430' => 'bna', 'A05p04820' => 'bna', 'A06p00700' => 'bna', 'A06p31860' => 'bna', 'A06p45300' => 'bna', 'A07p14730' => 'bna', 'A07p27730' => 'bna', 'A07p43260' => 'bna', 'A08p01390' => 'bna', 'A09p04730' => 'bna', 'A09p22810' => 'bna', 'A09p42600' => 'bna', 'Aa31LG10G1440' => 'aar', 'Aa31LG1G26210' => 'aar', 'Aa31LG4G8080' => 'aar', 'Aa31LG6G15480' => 'aar', 'Aa31LG6G420' => 'aar', 'Aa31LG9G5920' => 'aar', 'Aa31sc105G120' => 'aar', 'Actinidia03401' => 'ach', 'Actinidia05787' => 'ach', 'Actinidia10301' => 'ach', 'Actinidia19579' => 'ach', 'Actinidia21829' => 'ach', 'Actinidia24434' => 'ach', 'Actinidia25930' => 'ach', 'Actinidia28874' => 'ach', 'Actinidia29578' => 'ach', 'Actinidia30751' => 'ach', 'Actinidia30950' => 'ach', 'Actinidia32973' => 'ach', 'Actinidia33152' => 'ach', 'Actinidia40294' => 'ach', 'Ah.05g168600' => 'amhyb', 'Ah.07g199770' => 'amhyb', 'Ah.12g053790' => 'amhyb', 'AL167U10010' => 'aly', 'AL1G35610' => 'aly', 'AL1G62610' => 'aly', 'AL2G38270' => 'aly', 'AL4G43720' => 'aly', 'AL5G42440' => 'aly', 'AL7G12010' => 'aly', 'AL7G36920' => 'aly', 'AL8G11170' => 'aly', 'AL8G22630' => 'aly', 'AL8G42550' => 'aly', 'Aqoxy2G02918' => 'aox', 'Aqoxy3G02587' => 'aox', 'Aqoxy5G00776' => 'aox', 'Aqoxy6G00574' => 'aox', 'Aqoxy7G04169' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01RPY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24465A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BX83E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3DCX8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R7AHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9GB5B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D25GB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FS695C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FUF0I1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5ZJAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GW0K52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZHH6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6BE6Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS09WX' => 'arhy', 'AT1G22160' => 'ath', 'AT1G53885' => 'ath', 'AT1G53903' => 'ath', 'AT1G78020' => 'ath', 'AT2G44670' => 'ath', 'AT4G17670' => 'ath', 'AT4G39795' => 'ath', 'AT5G47060' => 'ath', 'AT5G49120' => 'ath', 'AT5G65040' => 'ath', 'ATR0099G052' => 'atr', 'ATR0564G433' => 'atr', 'ATR0829G017' => 'atr', 'Atru.chr1.4111' => 'acertr', 'Atru.chr13.1261' => 'acertr', 'Atru.chr4.167' => 'acertr', 'Atru.chr5.80' => 'acertr', 'Atru.chr6.1991' => 'acertr', 'Atru.chr9.1142' => 'acertr', 'AUR62001415' => 'cqu', 'AUR62007202' => 'cqu', 'AUR62013782' => 'cqu', 'AUR62018800' => 'cqu', 'AUR62022355' => 'cqu', 'AUR62023374' => 'cqu', 'AUR62034354' => 'cqu', 'BcaB02g07142' => 'bca', 'BcaB02g08846' => 'bca', 'BcaB02g10877' => 'bca', 'BcaB03g14231' => 'bca', 'BcaB04g17051' => 'bca', 'BcaB04g19595' => 'bca', 'BcaB04g19596' => 'bca', 'BcaB05g25093' => 'bca', 'BcaB06g29392' => 'bca', 'BcaB07g29770' => 'bca', 'BcaB07g30797' => 'bca', 'BcaB07g32235' => 'bca', 'BcaB07g33277' => 'bca', 'BcaB07g33279' => 'bca', 'BcaC01g01416' => 'bca', 'BcaC01g05203' => 'bca', 'BcaC02g07106' => 'bca', 'BcaC03g15782' => 'bca', 'BcaC03g16929' => 'bca', 'BcaC03g18298' => 'bca', 'BcaC04g21652' => 'bca', 'BcaC05g26142' => 'bca', 'BcaC06g31419' => 'bca', 'BcaC06g34288' => 'bca', 'BcaC06g34933' => 'bca', 'BcaC07g40417' => 'bca', 'BcaC07g40512' => 'bca', 'BcaC08g43567' => 'bca', 'BcaC08g47634' => 'bca', 'BcaC09g51622' => 'bca', 'BcaNung00071' => 'bca', 'BcaNung00901' => 'bca', 'BcaNung02309' => 'bca', 'BcaNung03394' => 'bca', 'BcaNung03450' => 'bca', 'BcaNung06929' => 'bca', 'BcaNung06930' => 'bca', 'BcaNung07169' => 'bca', 'BcaNung07219' => 'bca', 'BolC1t00083H' => 'bol', 'BolC1t01098H' => 'bol', 'BolC2t09541H' => 'bol', 'BolC2t10863H' => 'bol', 'BolC2t12442H' => 'bol', 'BolC3t15312H' => 'bol', 'BolC3t18372H' => 'bol', 'BolC3t21500H' => 'bol', 'BolC4t22194H' => 'bol', 'BolC4t28622H' => 'bol', 'BolC5t30825H' => 'bol', 'BolC6t36038H' => 'bol', 'BolC6t38234H' => 'bol', 'BolC6t40217H' => 'bol', 'BolC7t42698H' => 'bol', 'BolC7t43618H' => 'bol', 'BolC7t45400H' => 'bol', 'BolC7t46706H' => 'bol', 'BolC8t51120H' => 'bol', 'BolC9t53434H' => 'bol', 'BolC9t55795H' => 'bol', 'BraA01t00075Z' => 'bra', 'BraA01t00915Z' => 'bra', 'BraA02t07196Z' => 'bra', 'BraA02t08089Z' => 'bra', 'BraA02t09288Z' => 'bra', 'BraA03t11692Z' => 'bra', 'BraA03t14150Z' => 'bra', 'BraA04t18805Z' => 'bra', 'BraA05t19457Z' => 'bra', 'BraA06t23304Z' => 'bra', 'BraA06t26121Z' => 'bra', 'BraA06t27402Z' => 'bra', 'BraA07t29218Z' => 'bra', 'BraA07t30414Z' => 'bra', 'BraA07t31847Z' => 'bra', 'BraA08t32190Z' => 'bra', 'BraA09t36109Z' => 'bra', 'BraA09t37883Z' => 'bra', 'BraA09t39735Z' => 'bra', 'BraA09t40681Z' => 'bra', 'C01p00810' => 'bna', 'C01p11330' => 'bna', 'C02p35250' => 'bna', 'C02p48310' => 'bna', 'C02p63740' => 'bna', 'C03p29640' => 'bna', 'C03p91790' => 'bna', 'C04p05650' => 'bna', 'C04p71190' => 'bna', 'C05p21260' => 'bna', 'C06p09660' => 'bna', 'C06p30700' => 'bna', 'C06p51940' => 'bna', 'C07p21660' => 'bna', 'C07p30750' => 'bna', 'C07p48920' => 'bna', 'C07p62960' => 'bna', 'C08p35260' => 'bna', 'C09p05110' => 'bna', 'C09p29320' => 'bna', 'CAN.G1445.4' => 'can', 'CAN.G383.6' => 'can', 'CAN.G422.7' => 'can', 'CAN.G422.8' => 'can', 'CAN.G517.15' => 'can', 'CAN.G756.21' => 'can', 'CAN.G790.76' => 'can', 'CANSAT01G1608' => 'cansat', 'CANSAT21G0823' => 'cansat', 'CANSAT25G0088' => 'cansat', 'CANSAT25G2175' => 'cansat', 'CANSAT56G3481' => 'cansat', 'CANSAT78G2449' => 'cansat', 'CARHR022510' => 'chi', 'CARHR044210' => 'chi', 'CARHR071480' => 'chi', 'CARHR139880' => 'chi', 'CARHR174340' => 'chi', 'CARHR182620' => 'chi', 'CARHR224390' => 'chi', 'CARHR246910' => 'chi', 'CARHR293730' => 'chi', 'Carub.0001s2171' => 'cru', 'Carub.0001s4317' => 'cru', 'Carub.0002s2491' => 'cru', 'Carub.0004s2722' => 'cru', 'Carub.0005s2697' => 'cru', 'Carub.0007s0170' => 'cru', 'Carub.0007s2371' => 'cru', 'Carub.0008s0076' => 'cru', 'Carub.0008s0892' => 'cru', 'Carub.0008s2588' => 'cru', 'Ca_15229_v3' => 'car', 'Ca_16542_v3' => 'car', 'Ca_22035_v3' => 'car', 'Ca_26023_v3' => 'car', 'Ca_29703_v3' => 'car', 'Ca_30450_v3' => 'car', 'CBR_g37617' => 'cbr', 'Cc02_g25540' => 'ccan', 'Cc03_g01630' => 'ccan', 'Cc04_g00800' => 'ccan', 'Cc07_g15520' => 'ccan', 'Cc08_g01560' => 'ccan', 'Cc10_g05840' => 'ccan', 'CDE02G2193' => 'cde', 'CDE02G3756' => 'cde', 'CDE05G0698' => 'cde', 'CDE05G1343' => 'cde', 'CDE10G0317' => 'cde', 'CDE10G0615' => 'cde', 'CDE10G0700' => 'cde', 'CDE10G1242' => 'cde', 'CDE11G0202' => 'cde', 'CDE11G0797' => 'cde', 'Cfa002694' => 'cfa', 'Cfa011029' => 'cfa', 'Cfa015417' => 'cfa', 'Cfa015922' => 'cfa', 'Ciclev10002627m.g' => 'ccl', 'Ciclev10006176m.g' => 'ccl', 'Ciclev10013396m.g' => 'ccl', 'Ciclev10021925m.g' => 'ccl', 'Ciclev10023758m.g' => 'ccl', 'Ciclev10026585m.g' => 'ccl', 'Ciclev10026710m.g' => 'ccl', 'CiPaw.01G146100' => 'cil', 'CiPaw.01G212200' => 'cil', 'CiPaw.02G080500' => 'cil', 'CiPaw.02G131600' => 'cil', 'CiPaw.03G139300' => 'cil', 'CiPaw.04G097100' => 'cil', 'CiPaw.05G233100' => 'cil', 'CiPaw.06G022000' => 'cil', 'CiPaw.11G085700' => 'cil', 'CiPaw.12G058600' => 'cil', 'CiPaw.13G022400' => 'cil', 'CiPaw.14G017300' => 'cil', 'ClCG00G002470' => 'cla', 'ClCG01G018940' => 'cla', 'ClCG03G009030' => 'cla', 'ClCG05G002920' => 'cla', 'ClCG05G006210' => 'cla', 'ClCG06G005010' => 'cla', 'ClCG06G008220' => 'cla', 'ClCG07G009480' => 'cla', 'ClCG09G001330' => 'cla', 'ClCG09G012490' => 'cla', 'ClCG10G002030' => 'cla', 'ClCG11G015380' => 'cla', 'COL.COLO4_06706' => 'col', 'COL.COLO4_09921' => 'col', 'COL.COLO4_12358' => 'col', 'COL.COLO4_16457' => 'col', 'COL.COLO4_30856' => 'col', 'Cpa.g.sc16.199' => 'cpa', 'Cpa.g.sc25.183' => 'cpa', 'Cpa.g.sc52.74' => 'cpa', 'Cpa.g.sc557.1' => 'cpa', 'Cpa.g.sc66.88' => 'cpa', 'CsaV3_2G010910' => 'csa', 'CsaV3_3G002120' => 'csa', 'CsaV3_3G010480' => 'csa', 'CsaV3_3G014820' => 'csa', 'CsaV3_3G049670' => 'csa', 'CsaV3_4G004800' => 'csa', 'CsaV3_4G028720' => 'csa', 'CsaV3_5G023590' => 'csa', 'CsaV3_6G023890' => 'csa', 'CsaV3_6G045620' => 'csa', 'CsaV3_7G034000' => 'csa', 'CsaV3_UNG193490' => 'csa', 'CSS0007413' => 'camsi', 'CSS0008093' => 'camsi', 'CSS0009367' => 'camsi', 'CSS0020038' => 'camsi', 'CSS0021783' => 'camsi', 'CSS0022810' => 'camsi', 'CSS0023505' => 'camsi', 'CSS0026811' => 'camsi', 'CSS0040950' => 'camsi', 'CSS0046205' => 'camsi', 'DCAR_002476' => 'dca', 'DCAR_008309' => 'dca', 'DCAR_008709' => 'dca', 'DCAR_008711' => 'dca', 'DCAR_014242' => 'dca', 'DCAR_029508' => 'dca', 'DCAR_030510' => 'dca', 'Dinv13040' => 'din', 'Dinv16308' => 'din', 'Dinv20388' => 'din', 'Dinv21931' => 'din', 'Dinv25168' => 'din', 'Dinv28898' => 'din', 'Dinv29736' => 'din', 'Dinv37825' => 'din', 'Dinv43593' => 'din', 'Dinv44031' => 'din', 'Dinv44358' => 'din', 'Dinv44747' => 'din', 'Duzib041G0664' => 'dzi', 'Duzib068G0671' => 'dzi', 'Duzib093G1495' => 'dzi', 'Duzib116G0810' => 'dzi', 'Duzib133G0874' => 'dzi', 'Duzib138G1471' => 'dzi', 'Duzib147G0131' => 'dzi', 'Duzib151G1130' => 'dzi', 'Duzib160G0349' => 'dzi', 'Duzib187G0514' => 'dzi', 'Duzib192G0167' => 'dzi', 'Duzib205G0215' => 'dzi', 'Duzib212G0779' => 'dzi', 'Duzib235G0305' => 'dzi', 'Duzib264G1208' => 'dzi', 'ECA232G1560' => 'eca', 'ECA233G4098' => 'eca', 'ECA234G3652' => 'eca', 'ECA240G3068' => 'eca', 'ECA246G3315' => 'eca', 'ECA246G4760' => 'eca', 'ECA248G0761' => 'eca', 'EL10Ac1g00725' => 'bvu', 'EL10Ac1g01669' => 'bvu', 'EL10Ac5g12215' => 'bvu', 'EL10Ac7g16484' => 'bvu', 'Eucgr.D02144' => 'egr', 'Eucgr.E00328' => 'egr', 'Eucgr.E01695' => 'egr', 'Eucgr.E01696' => 'egr', 'Eucgr.F00485' => 'egr', 'Eucgr.H04814' => 'egr', 'Eucgr.I02159' => 'egr', 'Eucgr.J02600' => 'egr', 'Eucgr.L03204' => 'egr', 'Eucgr.L03664' => 'egr', 'FAN01G1463' => 'fan', 'FAN02G4475' => 'fan', 'FAN03G1369' => 'fan', 'FAN04G2669' => 'fan', 'FAN05G4070' => 'fan', 'FAN06G1495' => 'fan', 'FAN07G0428' => 'fan', 'FAN08G1217' => 'fan', 'FAN08G3556' => 'fan', 'FAN09G2800' => 'fan', 'FAN10G1258' => 'fan', 'FAN10G2638' => 'fan', 'FAN12G3000' => 'fan', 'FAN12G3790' => 'fan', 'FAN13G2089' => 'fan', 'FAN13G3076' => 'fan', 'FAN14G3441' => 'fan', 'FAN17G0988' => 'fan', 'FAN18G0144' => 'fan', 'FAN18G1126' => 'fan', 'FAN19G0737' => 'fan', 'FAN23G2190' => 'fan', 'FAN26G3238' => 'fan', 'FvH4_1g21440' => 'fve', 'FvH4_4g18540' => 'fve', 'FvH4_5g20840' => 'fve', 'FvH4_5g37970' => 'fve', 'FvH4_6g35720' => 'fve', 'FvH4_7g08920' => 'fve', 'Glyma.01G203200' => 'gma', 'Glyma.03G105400' => 'gma', 'Glyma.04G104800' => 'gma', 'Glyma.05G068500' => 'gma', 'Glyma.05G098400' => 'gma', 'Glyma.06G105800' => 'gma', 'Glyma.07G044900' => 'gma', 'Glyma.07G117300' => 'gma', 'Glyma.07G246200' => 'gma', 'Glyma.09G042900' => 'gma', 'Glyma.11G039800' => 'gma', 'Glyma.11G238700' => 'gma', 'Glyma.13G087300' => 'gma', 'Glyma.14G170100' => 'gma', 'Glyma.15G150200' => 'gma', 'Glyma.16G013000' => 'gma', 'Glyma.17G027800' => 'gma', 'Glyma.17G151000' => 'gma', 'Glyma.18G018800' => 'gma', 'Gohir.A02G050300' => 'ghi', 'Gohir.A02G132100' => 'ghi', 'Gohir.A02G132200' => 'ghi', 'Gohir.A03G003200' => 'ghi', 'Gohir.A05G229100' => 'ghi', 'Gohir.A06G037900' => 'ghi', 'Gohir.A06G143300' => 'ghi', 'Gohir.A08G056500' => 'ghi', 'Gohir.A08G056600' => 'ghi', 'Gohir.A08G161500' => 'ghi', 'Gohir.A09G197700' => 'ghi', 'Gohir.A09G237800' => 'ghi', 'Gohir.A10G050600' => 'ghi', 'Gohir.A10G165800' => 'ghi', 'Gohir.A11G074200' => 'ghi', 'Gohir.A11G199800' => 'ghi', 'Gohir.A12G211800' => 'ghi', 'Gohir.D02G055400' => 'ghi', 'Gohir.D03G043400' => 'ghi', 'Gohir.D03G043500' => 'ghi', 'Gohir.D03G169200' => 'ghi', 'Gohir.D05G231500' => 'ghi', 'Gohir.D06G039600' => 'ghi', 'Gohir.D06G149100' => 'ghi', 'Gohir.D08G065900' => 'ghi', 'Gohir.D08G066000' => 'ghi', 'Gohir.D08G181500' => 'ghi', 'Gohir.D09G192300' => 'ghi', 'Gohir.D09G238700' => 'ghi', 'Gohir.D10G052100' => 'ghi', 'Gohir.D10G172000' => 'ghi', 'Gohir.D11G078900' => 'ghi', 'Gohir.D11G223900' => 'ghi', 'Gohir.D12G095400' => 'ghi', 'Gohir.D12G214300' => 'ghi', 'Gorai.003G044500' => 'gra', 'Gorai.003G044600' => 'gra', 'Gorai.003G179300' => 'gra', 'Gorai.004G068200' => 'gra', 'Gorai.004G068300' => 'gra', 'Gorai.004G190400' => 'gra', 'Gorai.005G061300' => 'gra', 'Gorai.006G215200' => 'gra', 'Gorai.006G261400' => 'gra', 'Gorai.007G084500' => 'gra', 'Gorai.007G241500' => 'gra', 'Gorai.008G103900' => 'gra', 'Gorai.008G229900' => 'gra', 'Gorai.009G239700' => 'gra', 'Gorai.010G044000' => 'gra', 'Gorai.010G173600' => 'gra', 'Gorai.011G055700' => 'gra', 'Gorai.011G192100' => 'gra', 'GSVIVG01002962001' => 'vvi', 'GSVIVG01006366001' => 'vvi', 'GSVIVG01008993001' => 'vvi', 'GSVIVG01013267001' => 'vvi', 'GSVIVG01016679001' => 'vvi', 'GSVIVG01035123001' => 'vvi', 'HanXRQChr01g0015511' => 'han', 'HanXRQChr03g0087331' => 'han', 'HanXRQChr05g0147221' => 'han', 'HanXRQChr05g0162221' => 'han', 'HanXRQChr06g0167191' => 'han', 'HanXRQChr06g0168301' => 'han', 'HanXRQChr12g0383271' => 'han', 'HanXRQChr13g0417171' => 'han', 'HanXRQChr16g0521051' => 'han', 'Haze_00573' => 'cav', 'Haze_01172' => 'cav', 'Haze_02896' => 'cav', 'Haze_08323' => 'cav', 'Haze_16130' => 'cav', 'Haze_24969' => 'cav', 'Hma1.2p1_0173F.1_g076440' => 'hma', 'Hma1.2p1_0414F.1_g147540' => 'hma', 'Hma1.2p1_0467F.1_g158590' => 'hma', 'Hma1.2p1_1397F.1_g280790' => 'hma', 'HPP92_002332' => 'vpl', 'HPP92_009330' => 'vpl', 'HPP92_016219' => 'vpl', 'HPP92_016248' => 'vpl', 'HPP92_016435' => 'vpl', 'HPP92_016477' => 'vpl', 'HPP92_019314' => 'vpl', 'HPP92_022273' => 'vpl', 'HPP92_022378' => 'vpl', 'HPP92_025887' => 'vpl', 'HPP92_027254' => 'vpl', 'Hund14455' => 'sun', 'Hund17122' => 'sun', 'Hund18645' => 'sun', 'Hund27418' => 'sun', 'Lalb_Chr04g0253211' => 'lal', 'Lalb_Chr04g0253871' => 'lal', 'Lalb_Chr05g0214141' => 'lal', 'Lalb_Chr05g0220731' => 'lal', 'Lalb_Chr07g0195201' => 'lal', 'Lalb_Chr08g0241881' => 'lal', 'Lalb_Chr09g0323991' => 'lal', 'Lalb_Chr09g0329621' => 'lal', 'Lalb_Chr10g0102201' => 'lal', 'Lalb_Chr11g0075271' => 'lal', 'Lalb_Chr12g0196641' => 'lal', 'Lalb_Chr12g0210381' => 'lal', 'Lalb_Chr13g0303521' => 'lal', 'Lalb_Chr15g0086001' => 'lal', 'Lalb_Chr16g0379291' => 'lal', 'Lalb_Chr16g0386181' => 'lal', 'Lalb_Chr17g0343321' => 'lal', 'Lalb_Chr23g0270681' => 'lal', 'Lj1g0000323' => 'lja', 'Lj1g0026920' => 'lja', 'Lj2A250T15' => 'lonja', 'Lj2g0021323' => 'lja', 'Lj3g0004701' => 'lja', 'Lj3g0026093' => 'lja', 'Lj4g0001416' => 'lja', 'Lj4g0011541' => 'lja', 'Lj6g0010148' => 'lja', 'Lj8A287T26' => 'lonja', 'Lsat_1_v5_gn_1_39081' => 'lsa', 'Lsat_1_v5_gn_1_83600' => 'lsa', 'Lsat_1_v5_gn_3_15941' => 'lsa', 'Lsat_1_v5_gn_4_38441' => 'lsa', 'Lsat_1_v5_gn_6_102161' => 'lsa', 'Lsat_1_v5_gn_6_88460' => 'lsa', 'Lsat_1_v5_gn_7_12661' => 'lsa', 'Lsat_1_v5_gn_9_44300' => 'lsa', 'Manes.02G155100' => 'mes', 'Manes.03G197900' => 'mes', 'Manes.04G150300' => 'mes', 'Manes.05G057800' => 'mes', 'Manes.11G013400' => 'mes', 'Manes.12G137700' => 'mes', 'Manes.15G011100' => 'mes', 'Manes.15G171400' => 'mes', 'Manes.17G020000' => 'mes', 'Manes.18G070000' => 'mes', 'Mapoly0002s0054' => 'mpo', 'MBI02_g30889_MAGBIO' => 'mbi', 'MBI04_g46282_MAGBIO' => 'mbi', 'MBI05_g00406_MAGBIO' => 'mbi', 'MBI05_g00789_MAGBIO' => 'mbi', 'MBI18_g25342_MAGBIO' => 'mbi', 'MBI19_g32866_MAGBIO' => 'mbi', 'MBI19_g40830_MAGBIO' => 'mbi', 'MD00G1073400' => 'mdo', 'MD01G1025300' => 'mdo', 'MD02G1222600' => 'mdo', 'MD06G1043700' => 'mdo', 'MD07G1092800' => 'mdo', 'MD08G1178500' => 'mdo', 'MD09G1173600' => 'mdo', 'MD13G1166200' => 'mdo', 'MD15G1363900' => 'mdo', 'MD16G1166000' => 'mdo', 'MD17G1153400' => 'mdo', 'Medtr2g436020' => 'mtr', 'Medtr2g436250' => 'mtr', 'Medtr3g073960' => 'mtr', 'Medtr3g087700' => 'mtr', 'Medtr4g099050' => 'mtr', 'Medtr5g013770' => 'mtr', 'Medtr8g008840' => 'mtr', 'Medtr8g022950' => 'mtr', 'MELO3C000538.2' => 'cme', 'MELO3C006271.2' => 'cme', 'MELO3C006678.2' => 'cme', 'MELO3C007773.2' => 'cme', 'MELO3C010420.2' => 'cme', 'MELO3C013884.2' => 'cme', 'MELO3C017582.2' => 'cme', 'MELO3C020386.2' => 'cme', 'MELO3C021315.2' => 'cme', 'MELO3C022791.2' => 'cme', 'MELO3C024312.2' => 'cme', 'Migut.B01493' => 'egut', 'Migut.C00223' => 'egut', 'Migut.D00916' => 'egut', 'Migut.F01272' => 'egut', 'Migut.G00135' => 'egut', 'Migut.L00104' => 'egut', 'Migut.O00887' => 'egut', 'MSTRG.10108' => 'ama', 'MSTRG.15729' => 'ama', 'MSTRG.17115' => 'ama', 'MSTRG.20665' => 'ama', 'MSTRG.21789' => 'ama', 'MSTRG.22136' => 'ama', 'MSTRG.22521' => 'ama', 'MSTRG.24475' => 'ama', 'MSTRG.24798' => 'ama', 'MSTRG.24961' => 'ama', 'MSTRG.28134' => 'ama', 'MSTRG.3795' => 'ama', 'MSTRG.4538' => 'ama', 'MSTRG.4954' => 'ama', 'MSTRG.4955' => 'ama', 'MSTRG.4956' => 'ama', 'MSTRG.4958' => 'ama', 'MSTRG.9539' => 'ama', 'MSTRG.9540' => 'ama', 'Nitab4.5_0000204g0120' => 'nta', 'Nitab4.5_0000214g0010' => 'nta', 'Nitab4.5_0000421g0130' => 'nta', 'Nitab4.5_0000469g0170' => 'nta', 'Nitab4.5_0000506g0200' => 'nta', 'Nitab4.5_0000506g0230' => 'nta', 'Nitab4.5_0000563g0020' => 'nta', 'Nitab4.5_0000715g0150' => 'nta', 'Nitab4.5_0001255g0070' => 'nta', 'Nitab4.5_0002628g0060' => 'nta', 'Nitab4.5_0003987g0070' => 'nta', 'Nitab4.5_0004498g0050' => 'nta', 'Nitab4.5_0004906g0010' => 'nta', 'Nitab4.5_0005823g0010' => 'nta', 'Nitab4.5_0006135g0010' => 'nta', 'Nitab4.5_0006729g0030' => 'nta', 'Nitab4.5_0010233g0010' => 'nta', 'Nitab4.5_0011907g0010' => 'nta', 'Nitab4.5_0014631g0010' => 'nta', 'Nn1g00696' => 'nnu', 'Nn1g05281' => 'nnu', 'Nn3g20269' => 'nnu', 'Nn3g21528' => 'nnu', 'Nn4g25772' => 'nnu', 'Nn6g33724' => 'nnu', 'Oeu002181.2' => 'oeu', 'Oeu008394.1' => 'oeu', 'Oeu012018.1' => 'oeu', 'Oeu016253.1' => 'oeu', 'Oeu017312.1' => 'oeu', 'Oeu018379.1' => 'oeu', 'Oeu024553.1' => 'oeu', 'Oeu028047.1' => 'oeu', 'Oeu032168.1' => 'oeu', 'Oeu034856.1' => 'oeu', 'Oeu037420.1' => 'oeu', 'Oeu037541.1' => 'oeu', 'Oeu051799.1' => 'oeu', 'Oeu059022.1' => 'oeu', 'Oeu061478.1' => 'oeu', 'Os02g0592833' => 'osa', 'Os02g0686700' => 'osa', 'Os02g0686800' => 'osa', 'Os02g0687200' => 'osa', 'Os02g0751300' => 'osa', 'Os04g0585700' => 'osa', 'Os04g0585900' => 'osa', 'Os04g0586000' => 'osa', 'Os04g0586100' => 'osa', 'Os04g0586200' => 'osa', 'Os06g0125200' => 'osa', 'Os06g0223700' => 'osa', 'Os06g0714800' => 'osa', 'Os08g0407600' => 'osa', 'Os08g0451200' => 'osa', 'Os09g0433800' => 'osa', 'Peaxi162Scf00038g02119' => 'pax', 'Peaxi162Scf00041g00016' => 'pax', 'Peaxi162Scf00065g01522' => 'pax', 'Peaxi162Scf00084g00028' => 'pax', 'Peaxi162Scf00103g01216' => 'pax', 'Peaxi162Scf00160g01418' => 'pax', 'Peaxi162Scf00190g00036' => 'pax', 'Peaxi162Scf00422g00916' => 'pax', 'Peaxi162Scf00793g00212' => 'pax', 'PGR004G0537' => 'pgr', 'PGR031G1530' => 'pgr', 'PGR031G2443' => 'pgr', 'PGR042G1136' => 'pgr', 'PGR042G1994' => 'pgr', 'PGR042G3894' => 'pgr', 'PGR044G1822' => 'pgr', 'PGR102G1247' => 'pgr', 'PGR102G1987' => 'pgr', 'PGSC0003DMG400001688' => 'stu', 'PGSC0003DMG400001858' => 'stu', 'PGSC0003DMG400006700' => 'stu', 'PGSC0003DMG400008552' => 'stu', 'PGSC0003DMG400009139' => 'stu', 'PGSC0003DMG400009471' => 'stu', 'PGSC0003DMG400011313' => 'stu', 'PGSC0003DMG400021821' => 'stu', 'PGSC0003DMG400026591' => 'stu', 'PGSC0003DMG400026592' => 'stu', 'Phvul.001G250900' => 'pvu', 'Phvul.002G003100' => 'pvu', 'Phvul.003G096300' => 'pvu', 'Phvul.003G227300' => 'pvu', 'Phvul.008G171100' => 'pvu', 'Phvul.009G028800' => 'pvu', 'Phvul.009G250000' => 'pvu', 'Phvul.010G043001' => 'pvu', 'Phvul.010G124000' => 'pvu', 'Potri.001G148700' => 'ptr', 'Potri.001G163400' => 'ptr', 'Potri.002G092900' => 'ptr', 'Potri.002G140300' => 'ptr', 'Potri.003G071900' => 'ptr', 'Potri.003G085700' => 'ptr', 'Potri.005G078600' => 'ptr', 'Potri.005G168900' => 'ptr', 'Potri.007G089200' => 'ptr', 'Potri.008G219800' => 'ptr', 'Potri.010G011700' => 'ptr', 'Potri.014G052900' => 'ptr', 'Pp3c16_8260' => 'ppa', 'Pp3c25_400' => 'ppa', 'Prupe.1G132700' => 'ppe', 'Prupe.1G512200' => 'ppe', 'Prupe.2G118400' => 'ppe', 'Prupe.3G031700' => 'ppe', 'Prupe.5G050400' => 'ppe', 'Prupe.6G180700' => 'ppe', 'Psat0s1837g0040' => 'psa', 'Psat1g155520' => 'psa', 'Psat2g174160' => 'psa', 'Psat4g026200' => 'psa', 'Psat4g165880' => 'psa', 'Psat4g222160' => 'psa', 'Psat4g222200' => 'psa', 'Psat5g089080' => 'psa', 'Psat5g137000' => 'psa', 'PSO063G1774' => 'pso', 'PSO133G0093' => 'pso', 'PSO135G0045' => 'pso', 'PSO170G0486' => 'pso', 'PSO210G5237' => 'pso', 'PSO407G0281' => 'pso', 'PSO447G0112' => 'pso', 'PSO541G4360' => 'pso', 'PSO724G0260' => 'pso', 'PSO782G1847' => 'pso', 'QL04p026339' => 'qlo', 'QL05p001408' => 'qlo', 'QL05p001413' => 'qlo', 'QL06p010108' => 'qlo', 'QL06p050201' => 'qlo', 'QL12p007846' => 'qlo', 'QL12p036000' => 'qlo', 'RcHm_v2.0_Chr1g0344361' => 'rch', 'RcHm_v2.0_Chr2g0115261' => 'rch', 'RcHm_v2.0_Chr2g0147731' => 'rch', 'RcHm_v2.0_Chr4g0423101' => 'rch', 'RcHm_v2.0_Chr7g0207851' => 'rch', 'RcHm_v2.0_Chr7g0239911' => 'rch', 'Rhsim02G0007500' => 'rsi', 'Rhsim06G0085200' => 'rsi', 'Rhsim07G0038900' => 'rsi', 'Rhsim07G0120400' => 'rsi', 'Rhsim07G0200600' => 'rsi', 'Rhsim08G0009200' => 'rsi', 'Rhsim08G0243900' => 'rsi', 'Rhsim10G0158000' => 'rsi', 'Sabra01G0118600' => 'sbr', 'Sabra01G0129300' => 'sbr', 'Sabra02G0073300' => 'sbr', 'Sabra02G0109600' => 'sbr', 'Sabra03G0042800' => 'sbr', 'Sabra03G0055600' => 'sbr', 'Sabra05G0064600' => 'sbr', 'Sabra05G0126700' => 'sbr', 'Sabra07G0073600' => 'sbr', 'Sabra10G0007400' => 'sbr', 'SalBow4G1438' => 'sbo', 'SalBow5G1169' => 'sbo', 'SalBow5G2419' => 'sbo', 'SalBow5G2802' => 'sbo', 'SalBow6G0158' => 'sbo', 'SalBow6G4112' => 'sbo', 'SalBow7G1782' => 'sbo', 'SalBow7G3264' => 'sbo', 'Sc07g0008970' => 'sci', 'Sc13g0003300' => 'sci', 'Sc22g0000170' => 'sci', 'Sc22g0001250' => 'sci', 'Sc26g0001720' => 'sci', 'Sc26g0002260' => 'sci', 'Sed0002491' => 'sed', 'Sed0002785' => 'sed', 'Sed0002989' => 'sed', 'Sed0003217' => 'sed', 'Sed0003729' => 'sed', 'Sed0005161' => 'sed', 'Sed0006023' => 'sed', 'Sed0007785' => 'sed', 'Sed0009932' => 'sed', 'Sed0011959' => 'sed', 'Sed0013675' => 'sed', 'Sed0019026' => 'sed', 'Sed0019501' => 'sed', 'Sed0020720' => 'sed', 'Sed0021648' => 'sed', 'Sed0023946' => 'sed', 'Sed0024806' => 'sed', 'SEGI_03980' => 'sgi', 'SEGI_04961' => 'sgi', 'SEGI_07237' => 'sgi', 'SEGI_09031' => 'sgi', 'SEGI_16785' => 'sgi', 'SEGI_20887' => 'sgi', 'SEGI_24115' => 'sgi', 'SEGI_38778' => 'sgi', 'SGA_v2.0_scaffold28G11939' => 'sas', 'SGA_v2.0_scaffold34G13604' => 'sas', 'SGA_v2.0_scaffold47G17754' => 'sas', 'SGA_v2.0_scaffold4G02092' => 'sas', 'SGA_v2.0_scaffold52G19262' => 'sas', 'SGA_v2.0_scaffold67G22609' => 'sas', 'SGA_v2.0_scaffold68G22830' => 'sas', 'SHI00236' => 'shi', 'SMO241G0032' => 'smo', 'SMO293G0022' => 'smo', 'Solyc01g066570.3' => 'sly', 'Solyc01g088660.3' => 'sly', 'Solyc03g123460.4' => 'sly', 'Solyc04g054760.3' => 'sly', 'Solyc04g072780.4' => 'sly', 'Solyc06g061010.4' => 'sly', 'Solyc06g150124.1' => 'sly', 'Solyc08g077480.4' => 'sly', 'Solyc12g056950.2' => 'sly', 'Sopen01g028130' => 'spe', 'Sopen01g035510' => 'spe', 'Sopen03g041240' => 'spe', 'Sopen04g024580' => 'spe', 'Sopen04g028950' => 'spe', 'Sopen05g030380' => 'spe', 'Sopen06g021160' => 'spe', 'Sopen08g026070' => 'spe', 'Sopen12g029610' => 'spe', 'Sp1g19660' => 'spa', 'Sp1g40380' => 'spa', 'Sp2g11870' => 'spa', 'Sp2g19470' => 'spa', 'Sp2g28120' => 'spa', 'Sp4g26750' => 'spa', 'Sp5g02990' => 'spa', 'Sp5g33160' => 'spa', 'Sp7g16470' => 'spa', 'Sp7g36100' => 'spa', 'TAR365G0819' => 'tar', 'TAR374G0246' => 'tar', 'TAR375G1072' => 'tar', 'TAR375G1124' => 'tar', 'TAR376G0983' => 'tar', 'TAR381G0155' => 'tar', 'TAR383G0856' => 'tar', 'TAR625G0406' => 'tar', 'TAR626G0390' => 'tar', 'TAR628G0177' => 'tar', 'TAR628G1146' => 'tar', 'TAR629G2367' => 'tar', 'TAR633G0160' => 'tar', 'THA.LOC104800162' => 'tha', 'THA.LOC104801701' => 'tha', 'THA.LOC104802506' => 'tha', 'THA.LOC104804160' => 'tha', 'THA.LOC104804657' => 'tha', 'THA.LOC104804734' => 'tha', 'THA.LOC104806075' => 'tha', 'THA.LOC104806685' => 'tha', 'THA.LOC104810072' => 'tha', 'THA.LOC104810583' => 'tha', 'THA.LOC104812823' => 'tha', 'THA.LOC104818911' => 'tha', 'THA.LOC104822618' => 'tha', 'THA.LOC109116833' => 'tha', 'Thecc.01G105500' => 'tca', 'Thecc.01G401800' => 'tca', 'Thecc.03G236700' => 'tca', 'Thecc.04G287800' => 'tca', 'Thecc.06G129200' => 'tca', 'Thecc.08G111300' => 'tca', 'Thhalv10001043m.g' => 'esa', 'Thhalv10001797m.g' => 'esa', 'Thhalv10005159m.g' => 'esa', 'Thhalv10008987m.g' => 'esa', 'Thhalv10012085m.g' => 'esa', 'Thhalv10019245m.g' => 'esa', 'Thhalv10026417m.g' => 'esa', 'Thhalv10027166m.g' => 'esa', 'TPR.G18152' => 'tpr', 'TPR.G19194' => 'tpr', 'TPR.G27482' => 'tpr', 'TPR.G32116' => 'tpr', 'TPR.G33945' => 'tpr', 'TPR.G34615' => 'tpr', 'TPR.G8665' => 'tpr', 'TWI09G0050' => 'twi', 'TWI12G0031' => 'twi', 'TWI15G1151' => 'twi', 'TWI15G1174' => 'twi', 'TWI23G0400' => 'twi', 'TWI23G0953' => 'twi', 'TWI53G2029' => 'twi', 'TWI56G0164' => 'twi', 'TWI59G1145' => 'twi', 'TWI60G1000' => 'twi', 'TWI74G0243' => 'twi', 'TWI81G0034' => 'twi', 'unitig_0.g2755' => 'ugi', 'unitig_22.g6700' => 'ugi', 'unitig_32.g10639' => 'ugi', 'unitig_61.g26424' => 'ugi', 'unitig_8.g4834' => 'ugi', 'unitig_88.g27711' => 'ugi', 'vmacro04765' => 'vma', 'vmacro08177' => 'vma', 'vmacro12944' => 'vma', 'vmacro13529' => 'vma', 'vmacro14114' => 'vma', 'vmacro15081' => 'vma', 'vmacro15217' => 'vma', 'vmacro18612' => 'vma', 'vmacro21230' => 'vma', 'vmacro22832' => 'vma', 'VMungo0251G1678' => 'vmu', 'VMungo0331G1346' => 'vmu', 'VMungo0331G1744' => 'vmu', 'VMungo0647G0175' => 'vmu', 'VMungo1215G0545' => 'vmu', 'VMungo1215G2894' => 'vmu', 'VMungo1309G0930' => 'vmu', 'VMungo1309G1391' => 'vmu', 'VMungo1309G2562' => 'vmu', 'VMungo1383G2475' => 'vmu', 'Zm00001eb006260' => 'zma', 'Zm00001eb040730' => 'zma', 'Zm00001eb042220' => 'zma', 'Zm00001eb072650' => 'zma', 'Zm00001eb072660' => 'zma', 'Zm00001eb072670' => 'zma', 'Zm00001eb072680' => 'zma', 'Zm00001eb072690' => 'zma', 'Zm00001eb072700' => 'zma', 'Zm00001eb098640' => 'zma', 'Zm00001eb178840' => 'zma', 'Zm00001eb187540' => 'zma', 'Zm00001eb187560' => 'zma', 'Zm00001eb187570' => 'zma', 'Zm00001eb194270' => 'zma', 'Zm00001eb245880' => 'zma', 'Zm00001eb250970' => 'zma', 'Zm00001eb250980' => 'zma', 'Zm00001eb250990' => 'zma', 'Zm00001eb255110' => 'zma', 'Zm00001eb272350' => 'zma', 'Zm00001eb311150' => 'zma', 'Zm00001eb313760' => 'zma', 'Zm00001eb313860' => 'zma', 'Zm00001eb372600' => 'zma', 'Zm00001eb428170' => 'zma', 'Zm00001eb428210' => 'zma' ) $gf_id = 'HOM05D000562' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000562' ) $data_identifier = 'HOM05D000562' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 20, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 12, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 35, 'gra' => (int) 18, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 18, 'lja' => (int) 8, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 11, 'egut' => (int) 7, 'ama' => (int) 19, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 16, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 10, 'tar' => (int) 13, 'tha' => (int) 14, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428210' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1